Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILVVDNYDSFVFNLVQYLGQLGIEAEVWRNDDHRLSDEAAVAGQFDGVLLSPGPGTPERAGASVSIVHACAAAHTPLLGVCLGHQAIGVAFGATVDRAPELLHGKTSSVFHTNVGVLQGLPDPFTATRYHSLTILPKSLPAVLRVTARTSSGVIMAVQHTGLPIHGVQFHPESILTEGGHRILANWLTCCGWTQDDTLVRRLENEVLTAISPHFPTSTASAGEATGRTSA
2D7J Chain:A ((2-187))
-MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT---PLEEIKAMNPKGIIFSGGPSL-ENTGNCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGEKAEYSLVEIEIIDEDEIFKGLPKRLKVWESHMDEV--KELPPKFKILARSETCPIEAMKHEELPIYGVQFHPEVAHTEKGEEILRNFAKLCG---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2D7J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141358 for 1633 contacts (-86.6/contact) +
2D Compatibility (PS) -19668 + (NN) -4630 + (LL) 2720
1D Compatibility (HY) -11200 + (ID) 3000
Total energy: -177136.0 ( -108.47 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_2D7J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D7J-query.scw
PDB file :
Tito_Scwrl_2D7J.pdb
: