Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKALLEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR
4GOY Chain:A ((218-278))
-------------SGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAANE-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4GOY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21477 for 233 contacts (-92.2/contact) +
2D Compatibility (PS) -5532 + (NN) 464 + (LL) 3124
1D Compatibility (HY) -1200 + (ID) 700
Total energy: -25321.0 ( -108.67 by residue)
QMean score : -0.028
(partial model without unconserved sides chains):
PDB file :
Tito_4GOY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GOY-query.scw
PDB file :
Tito_Scwrl_4GOY.pdb
: