Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLARHFGAGRKAHSRAV----ATLKADIQ---AWHPAGIQTPKPRCESDVFARIGHTSHPSTRKSRVGPGASEAPLA
4LNB Chain:A ((170-241))
-LVRHFKLWD--HPREIQDVEALLKADVRNNSAWNHRYMLRFGPRDENEFDAGLHNTTGPSSEKGRL----------
General information:
TITO was launched using:
RESULT:
Template:
4LNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3414 for 273 contacts (12.5/contact) +
2D Compatibility (PS) -5950 + (NN) -3275 + (LL) 476
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -9635.0 ( -35.29 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_4LNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LNB-query.scw
PDB file :
Tito_Scwrl_4LNB.pdb
: