Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKRRTQEERSAATREALITGARKLWGLRGYAEVGTPEIATEAGVTRGAMYHQFADKAALFRDVVEVVEQDVMARMATLVAASGAATPADAIRAAVDAWLEVSGDPEVRQL---ILLDAPVVLGWAGFRDVAQRY----SLGMTEQLITEAIRAGQLARQPVRPLAQVL----IGALDEAAMFIATADDPKRARRETRQVLRRLIDGMLNG
3LHQ Chain:A ((6-195))
-----RKTKQQALETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWELSESNI-GELEIEYQAKFPDDPLSVLREILVHILEATVTEERRRLLMEIIFHKCEFVGEMVVVQQAQRSLCLESYDRIEQTLKHCINAKMLPENLLTRRAAILMRSFISGLMENWLFAPQSFDLKKEAR----------------
General information:
TITO was launched using:
RESULT:
Template:
3LHQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42246 for 1203 contacts (-35.1/contact) +
2D Compatibility (PS) -19581 + (NN) -11453 + (LL) 2096
1D Compatibility (HY) -10400 + (ID) 2550
Total energy: -84134.0 ( -69.94 by residue)
QMean score : 0.316
(partial model without unconserved sides chains):
PDB file :
Tito_3LHQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LHQ-query.scw
PDB file :
Tito_Scwrl_3LHQ.pdb
: