Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSNANFSILVDFAAGGLVLASVLIVWRRDLRAIVRLLAWQGAALAAIPLLRGIRDNDRALIAVGIAVLALRALVLPWLLARAVGAEAAAQREATPLVNTASSLLITAGLTLTAFAITQPVVNLEPGVTINAVPAAFAVVLIALFVMTTRLHAVSQAAGFLMLDNGIAATAFLLTAG-VPLIVELGASLDVLFAVIVIGV---LTGRLRRIFGDADLDKLRELRD |
| 3RKO Chain:K ((5-100)) | --------------------------------------------------------------------------------------------------------------------------------QHGLILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -41846 for 534 contacts (-78.4/contact) +
2D Compatibility (PS) -9671 + (NN) -6603 + (LL) 12312
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -48108.0 ( -90.09 by residue)
QMean score : 0.125
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