Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRDRILAAVCDVLYIDEADLIDGDETDLRDLGLDSVRFVLLMKQL----GVNRQSELPSRLAANPSIAGWLRELEAVCTEFG
2VSQ Chain:A ((974-1060))
-EETIAQIWSEVLGRK--QIG--IHDDFFALGGHALKAMTAASRIKKELGID--LPVK-LLFEAPTIAGISAYLKNGG----
General information:
TITO was launched using:
RESULT:
Template:
2VSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46171 for 433 contacts (-106.6/contact) +
2D Compatibility (PS) -7067 + (NN) -4970 + (LL) 516
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -59542.0 ( -137.51 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_2VSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VSQ-query.scw
PDB file :
Tito_Scwrl_2VSQ.pdb
: