Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYHVGRAHHRIL
1JDE Chain:A ((435-492))
---IEGMHAAEGILTVRGGMTSHAAVVARGMGTCCVSGCGEIKINEE----AKTFELGGH---------
General information:
TITO was launched using:
RESULT:
Template:
1JDE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3252 for 289 contacts (-11.3/contact) +
2D Compatibility (PS) -5625 + (NN) -80 + (LL) 1784
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -9123.0 ( -31.57 by residue)
QMean score : 0.113
(partial model without unconserved sides chains):
PDB file :
Tito_1JDE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JDE-query.scw
PDB file :
Tito_Scwrl_1JDE.pdb
: