Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVGPVGHQCAECVREGARAVRQPRTPFGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLAL-WP-PAVASGQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSA-LGGSVLVYLIAPLNTATAGASGAVFGLFGATFMVARR-----LHLDVRWVVALIVINLA--FTFLAPAISWQGHVGGLVTGALVAATYVYAPRERRNLIQATVTITVLVAFVVLIGWRTVDLLALFGGRLNLS
5F5D Chain:A ((91-272))
---------------------------------ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW---FGGLSGVVFALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDL--------AHIAGLAVGLAMAFVDSLNA-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
5F5D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135401 for 1258 contacts (-107.6/contact) +
2D Compatibility (PS) -16817 + (NN) -4598 + (LL) 6804
1D Compatibility (HY) -14400 + (ID) 2150
Total energy: -166562.0 ( -132.40 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_5F5D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5F5D-query.scw
PDB file :
Tito_Scwrl_5F5D.pdb
: