Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGT----HAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPG---KVVTEVSPAGDFWEAEPEHQDYLQRYPNGYTCHFVRPGWRLPRRTAESALRASLSPELGT
2GT3 Chain:A ((45-194))
------AIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHKNP---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2GT3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61643 for 1110 contacts (-55.5/contact) +
2D Compatibility (PS) -15744 + (NN) -11616 + (LL) 1908
1D Compatibility (HY) -10800 + (ID) 3300
Total energy: -101195.0 ( -91.17 by residue)
QMean score : 0.773
(partial model without unconserved sides chains):
PDB file :
Tito_2GT3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GT3-query.scw
PDB file :
Tito_Scwrl_2GT3.pdb
: