Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDAA---------------DAQAVVTNYHVGGI-LIGSDTDLTIFDGALAEIVAGGGP-LPLAVSVDEEGGRVSRLRSLIGGTGPSARELAQTRTVQQVRDLARDRGRQMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYA-QGLRDAGVLPVLKHFPGHGRGSGDSHNG-GVTTPPLDDLVGDDLVPYRTLVTQAPVGVMVGHLQVPG---------LTGSE---PASLSKAAVN-LLRTGTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALW---VTT----KEVPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
| 3NVD Chain:A ((26-393)) | ----------------------------ASASKRAIDANQI---VNR-----------MSLDEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASLVKKYQFGGIILFAENVKTTKQTVQLTDDYQKASPKIPLMLSIDQEGGIVTRLGE--GTNFPGNMALGAARSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSN-RELTSRLGLYTMKGLQRQDIASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMG-----FNGVIVTDALN-MKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLK-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NVD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138136 for 2885 contacts (-47.9/contact) +
2D Compatibility (PS) -35832 + (NN) -18331 + (LL) 1960
1D Compatibility (HY) -23600 + (ID) 6000
Total energy: -219939.0 ( -76.24 by residue)
QMean score : 0.445
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