Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNLALWSRPVWDVEPWDRWLRDFFGPAATTDWYRPVAGDFTPAAEIVKDGDDAVVRLELPGIDVDKDVNVELDPGQPVSRLVIRGEHRDEHTQDAGDKDGRTLREIRYGSFRRSFRLPAHVTSEAIAASYDAGVLTVRVAGAYKAPAETQAQRIAITK
3GLA Chain:A ((4-94))
-----------------------------------------VPRVDIKEEVNHFVLYADLPGIDPSQ-IEVQMDKGI----LSIRGERKSESSTET-ERFSRIER--RYGSFHRRFALPDSADADGITAAGRNGVLEIRI-------------------
General information:
TITO was launched using:
RESULT:
Template:
3GLA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57809 for 587 contacts (-98.5/contact) +
2D Compatibility (PS) -9605 + (NN) -4040 + (LL) 4204
1D Compatibility (HY) -4800 + (ID) 1700
Total energy: -73750.0 ( -125.64 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_3GLA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GLA-query.scw
PDB file :
Tito_Scwrl_3GLA.pdb
: