Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHESRLASARLYLCTDARRERGDLAQFAEAALAGGVDIIQLRDKGS---PGELRFGPLQARDELAACEILADAAHRYGALFAVNDRADIARAAGADVLHLGQRDLPVNVARQILAPDTLIGRSTHDPDQVAAAAAGDADYFCVGPCWPTPTKP-GRAAPGLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSALTAAN
1G4T Chain:A ((20-220))
----------VYFIMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKF--AEKAQAAC-------REAGVPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIG-DMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIE-AVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEI----
General information:
TITO was launched using:
RESULT:
Template:
1G4T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127250 for 1659 contacts (-76.7/contact) +
2D Compatibility (PS) -22689 + (NN) -20733 + (LL) 2412
1D Compatibility (HY) -10000 + (ID) 3400
Total energy: -181660.0 ( -109.50 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_1G4T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G4T-query.scw
PDB file :
Tito_Scwrl_1G4T.pdb
: