Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNNGRMLGVIGGSGFYTFFG-SDTRTVNSDTPYGQPSAPITIGTIGVHDVAFLPRHGAHHQYSAHAVPYRANMWALRALGVRRVFGPCAVGSLDPELEPGAVVVPDQLVDRTSGRADTYFDFGGV-HAAFADPYCPT-----LRAAVTGLPGVVDG-----GTMVVIQGPRFSTRAESQWFAAAGCNLVNMTGYPEAVLARELELCYAAIALVTDVDAGVAAGDGVKAADVFAAFGENIELLKRLVRAAIDRVADERTCTHCQHHAGVPLPFELP
4GLJ Chain:A ((11-264))
--KNAADIAIIGGSGLYQMQALTNKRSVKIETPYGEPSDDIVLGELNGVTVAFLTRHGQGHRLTPSEVPYRANIYALKTLGVRYIVSVSAVGSLQETLKPLDMVIPDQMIDMTKQRVSTFFGDGAVAHVSMADPLCPEVADILIRAYDNA--DIADGQCHAKATYVCIEGPQFSTRAESHWYRQMQADIIGMTNMPEAKLAREASIAYATLALVTDFDCWHPNEQAVSADYAIQNLMKNADNAQQVIKQAVALIASEQ------------------
General information:
TITO was launched using:
RESULT:
Template:
4GLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140704 for 1962 contacts (-71.7/contact) +
2D Compatibility (PS) -26586 + (NN) -18914 + (LL) 1088
1D Compatibility (HY) -19600 + (ID) 5050
Total energy: -209766.0 ( -106.91 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_4GLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GLJ-query.scw
PDB file :
Tito_Scwrl_4GLJ.pdb
: