Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTKDAVAVVTGGASGLGLATTKRLLDAGAQVVVVDL---RGDDVVGGLGDRARFAQADVTDEAAVSNALELA-DSLGPVRVVVNCAGTGNAIRVL--SRDGVFPLAAFRKIVDINLVGTFNVLRLGAERIAKTEP-IGEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDLASKLIRVVTIAPGLFDTPLLASLPAEAKASLGQQVPHPSRLGNPDEYGALVLHIIENPMLNGEVIRLDGAIRMAPR
1E3W Chain:B ((9-261))
---KGLVAVITGGASGLGLSTAKRLVGQGATAVLLDVPNSEGETEAKKLGGNCIFAPANVTSEKEVQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVINVNLIGTFNVIRLVAGVMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVVTIAPGLFATPLLT--------FLASQVPFPSRLGDPAEYAHLVQMVIENPFLNGEVIRLDGAIRMQP-
General information:
TITO was launched using:
RESULT:
Template:
1E3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156502 for 2030 contacts (-77.1/contact) +
2D Compatibility (PS) -25413 + (NN) -9069 + (LL) 1032
1D Compatibility (HY) -25600 + (ID) 7300
Total energy: -222852.0 ( -109.78 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_1E3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1E3W-query.scw
PDB file :
Tito_Scwrl_1E3W.pdb
: