Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDHAEVS-VITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGVPY-TDALPEMPEPAIEVEPPVCD-CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
1M2H Chain:A ((15-240))
--LVALTGAGVAAESGIPTFRG-KDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPL------PKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV-----
General information:
TITO was launched using:
RESULT:
Template:
1M2H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109320 for 1867 contacts (-58.6/contact) +
2D Compatibility (PS) -24315 + (NN) -13645 + (LL) 1260
1D Compatibility (HY) -18400 + (ID) 5350
Total energy: -169770.0 ( -90.93 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_1M2H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2H-query.scw
PDB file :
Tito_Scwrl_1M2H.pdb
: