Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARQVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR
4QVB Chain:A ((4-144))
---QVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPP---
General information:
TITO was launched using:
RESULT:
Template:
4QVB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61542 for 1057 contacts (-58.2/contact) +
2D Compatibility (PS) -15677 + (NN) -13184 + (LL) 588
1D Compatibility (HY) -18000 + (ID) 7000
Total energy: -114815.0 ( -108.62 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_4QVB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QVB-query.scw
PDB file :
Tito_Scwrl_4QVB.pdb
: