Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMPTEYPATAEESVDVITDALLTASRLLVAISAHSIAQVDENITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTEHRRTEIARIVEQMAPAERHGLVRALTAFTEAGGEPDARYEIE
3VOD Chain:A ((37-111))
-----------------------------------------DITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVSKGWVERLPNPNDKRGVLVKLTTGGAAICEQC--------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52408 for 502 contacts (-104.4/contact) +
2D Compatibility (PS) -7608 + (NN) -2094 + (LL) 7632
1D Compatibility (HY) -8000 + (ID) 1300
Total energy: -63778.0 ( -127.05 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_3VOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VOD-query.scw
PDB file :
Tito_Scwrl_3VOD.pdb
: