Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTAPAICNTTETVHGIATSLGAVARQASLPRIVGTVVGITVLVVVALLVPVPTAVELRDWAKSLGAWFPLAFLLVHTVVTVPPFPRTAFTLAAGLLFGSVVGVFIAVVGSTASAVIAMLLVRATGWQLNSLVRRRAINRLDERLRERGWLAILSLRLIPVVPFAAINYAAGASGVRILSFAWATLAGLLPGTAAVVILGDAFAGSGSPLLILVSVCTGALGLTGLVYEIRNYRRQHRRMPGYDDPVREPALI |
3GG4 Chain:A ((235-281)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSQRAASEMGLIPGTAVSVSIIDAHAGT-----------IGILGASGV--ENANFDRR----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GG4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -8343 for 195 contacts (-42.8/contact) +
2D Compatibility (PS) -4559 + (NN) 1558 + (LL) 17716
1D Compatibility (HY) 0 + (ID) 1050
Total energy: 5322.0 ( 27.29 by residue)
QMean score : -0.248
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