Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDHKVPFNRPYMTGRELAYIAEAHSCGHLAGDGPFTRRSHAWLEQQTGCRKALLTPSCTAALEMMALLLDIEEGDEVILPSYTFVSTANAFVLRGGVPVFVDIRPDTLNIDETRIVDAITPRTKAIVPVHYAGVACEMDAIMKIATHHNLAVVEDAAQGAMASYRGRALGSIGDLGALSFHETKNVISGEGGALLVNS
1MDZ Chain:A ((9-213))
--DF-LPFSRPAMGAEELAAVKTVLDSGWIT-TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGT-AIFSFHAIKNITCAEGGIVVTDN
General information:
TITO was launched using:
RESULT:
Template:
1MDZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108029 for 1517 contacts (-71.2/contact) +
2D Compatibility (PS) -21073 + (NN) -8715 + (LL) 248
1D Compatibility (HY) -11200 + (ID) 4000
Total energy: -152769.0 ( -100.70 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_1MDZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MDZ-query.scw
PDB file :
Tito_Scwrl_1MDZ.pdb
: