Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAHRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEADGHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRKFRLPVTGWRGK
1Y3H Chain:A ((5-307))
----RSVLLVVHT-----TETARRVEKVLGDNKIALRVLS------------------------------HAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEADGHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRKFRLPVIGWRGK
General information:
TITO was launched using:
RESULT:
Template:
1Y3H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -209969 for 2192 contacts (-95.8/contact) +
2D Compatibility (PS) -29515 + (NN) -13933 + (LL) 2792
1D Compatibility (HY) -39200 + (ID) 13350
Total energy: -303175.0 ( -138.31 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_1Y3H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y3H-query.scw
PDB file :
Tito_Scwrl_1Y3H.pdb
: