Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEMALAQQVPNLGLARFSVQDKSILITGATGSLGRVAARALADAGARLTLAGGNSAGLAELVNGA-GIDDAAVVTCRPDSLADAQQMVEAALGRYGRLDGVLVASGSNHVAPITEMAVEDFDAVMDANVRGAWLVCRAAGRVLLEQGQGGSVVLVSSVRGGLGNAAGYSAYCPSKAGTDLLAKTLAAEWGGHGIRVNALAPTVFRSAVTEWMFTDDPKGRATREAMLARIPLRRFAEPEDFVGALIYLLSDASSFYTGQVMYLDGGYTAC
3D3W Chain:B ((8-244))
----------------------RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCV------DLGD-WEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQC-SQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAK----TMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGFWAC
General information:
TITO was launched using:
RESULT:
Template:
3D3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178442 for 2044 contacts (-87.3/contact) +
2D Compatibility (PS) -25326 + (NN) -9183 + (LL) 2620
1D Compatibility (HY) -16400 + (ID) 4300
Total energy: -231031.0 ( -113.03 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3D3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D3W-query.scw
PDB file :
Tito_Scwrl_3D3W.pdb
: