Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDYLRDAAEIYRRSFAVIRAEADLARFPADVARVVVRLIHTCGQVDVAEHVAYTDDVVARAGAALAAGAPVLCDSSMVAAGITTSRLPADNQIVSLVADPRATELAARRQTTRSAAGVELCAERLPGAVLAIGNAPTALFRLLELVDEGAPP-PAAVLGGPVGFVGSAQAKEEL-IERPRGMSYLVVRGRRGGSAMAAAAVNAIASDRE
4FDV Chain:A ((4-209))
--EYEKDGAKIYVQSFATIRAEADLARFTPEEEVVVVRMIHAAGMVGLENHVRFAPGMAIAARAALEAGAPILCDARMVSEGITRARLPAKNEVICTLQDPRVPALAQEMGNTRSAAALELWRPKLEGAVVAIGNAPTALFHLLNMLEDPACPRPAAIIGCPVGFIGAAESKAALAVANP--VPWVIVEGRLGGSAITVAAVNALACRKE
General information:
TITO was launched using:
RESULT:
Template:
4FDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150120 for 1762 contacts (-85.2/contact) +
2D Compatibility (PS) -22980 + (NN) -15874 + (LL) 312
1D Compatibility (HY) -20400 + (ID) 5300
Total energy: -214362.0 ( -121.66 by residue)
QMean score : 0.695
(partial model without unconserved sides chains):
PDB file :
Tito_4FDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FDV-query.scw
PDB file :
Tito_Scwrl_4FDV.pdb
: