Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTATASDDEAVTALALSAAKGNGRALEAFIK----ATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLTG
4CXF Chain:A ((10-183))
-------------LAAQAASGNQRAFGQLVARHGVALAQAARSFGIPETDV---DDVVQDTFVAAWHALDDFDPDRPFRAWLFRIGLNKMRDLYRFRR---------------------AARLELARVASTLGKLDTGSREVIVLTAIVGMSQPEAAAVLGLSVKAVEGRIGRARAKLSA---------
General information:
TITO was launched using:
RESULT:
Template:
4CXF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93375 for 1020 contacts (-91.5/contact) +
2D Compatibility (PS) -15180 + (NN) -6311 + (LL) 1596
1D Compatibility (HY) -8800 + (ID) 2500
Total energy: -124570.0 ( -122.13 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_4CXF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CXF-query.scw
PDB file :
Tito_Scwrl_4CXF.pdb
: