Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSPDPYAALPKLPSFSLTSTSITDGQPLATPQVSGIMGAGGADASPQLRWSGFPSETRSFAVTVYDPDAPTLSGFWHWAVANLPANVTELPEGVGDGR-ELPGGALTLVNDAGMRRYVGAAPPPGHGVHRYYVAVHAVKVEKLDLPEDASPAYLGFNLFQHAIARAVIFGTYEQR
1FJJ Chain:A ((3-154))
-----------------KLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGE-THRYIFTVHALDIERIDVDEGASGAMVGFNVHFHSLASASI-------
General information:
TITO was launched using:
RESULT:
Template:
1FJJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66473 for 1167 contacts (-57.0/contact) +
2D Compatibility (PS) -16502 + (NN) -12589 + (LL) 804
1D Compatibility (HY) -10400 + (ID) 3600
Total energy: -108760.0 ( -93.20 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_1FJJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FJJ-query.scw
PDB file :
Tito_Scwrl_1FJJ.pdb
: