Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDVLRTPDSRFEHLVGYPFAPHYVDVTAGDTQPLRMHYVDEGPGDGPPIVL-LHGEPTWSYLYRTMIPPLSAAGHRVLAPDLIGFGRSDKPTRIEDYTYLRHVEWVTSWFENLDLHDVTLFVQDWGSLIGLRIAAEHGDRIARLVVANGFL-------PAAQGRTPLP---FYVWRAFARYSPVLPAGRLVNFGTVHRVPAGVRA---GYDAPFPDKTYQAGARAFPRLVPTSPDDPAVPANRAAWEALGRWD-----KPFLAIFGYRDPILGQADGPLIKHIPGAAGQPHARIKASHFIQEDSGTELAERMLSWQQAT |
| 1CIJ Chain:A ((2-304)) | VNAIRTPDQRFSNLDQYPFSPNYLDDLPG-YPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADGFTAW----KYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMV-AQRDQACIDIST---EAISFWQNDWNGQTFMAI-GMKDKLLGPDVMYPMKALINGCPEPLEIADAGHFVQE-FGEQVAREALK----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CIJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -119958 for 2456 contacts (-48.8/contact) +
2D Compatibility (PS) -29419 + (NN) -11411 + (LL) 1396
1D Compatibility (HY) -22800 + (ID) 5950
Total energy: -188142.0 ( -76.61 by residue)
QMean score : 0.445
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