Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARDARKRTSSNFPQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGSA
4ONC Chain:A ((1-280))
------------FPQLPPAPDDYPTFPDTSTWPVVFPELPAA---GPCRPPQHTSKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRR----
General information:
TITO was launched using:
RESULT:
Template:
4ONC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135092 for 2253 contacts (-60.0/contact) +
2D Compatibility (PS) -30056 + (NN) -20299 + (LL) 556
1D Compatibility (HY) -34800 + (ID) 13850
Total energy: -233541.0 ( -103.66 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_4ONC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ONC-query.scw
PDB file :
Tito_Scwrl_4ONC.pdb
: