Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFVITNPEALTVAATEVRRIRDRAIQSDAQVAPMTTAVRPPAADLVSEKAATFLVEYARKYRQTIAAAAVVLEEFAHALTTGADKYATAEADNIKTFS
4W4K Chain:A ((8-89))
-------PEALTVAATEVRRIRDRAIQSDAQVAPMTTAVRPPAADLVSEKAATFLVEYARKYRQTIAAAAVVLEEFAHALTTGADKYAT----------
General information:
TITO was launched using:
RESULT:
Template:
4W4K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8665 for 461 contacts (-18.8/contact) +
2D Compatibility (PS) -9208 + (NN) -7030 + (LL) 1340
1D Compatibility (HY) -8800 + (ID) 4100
Total energy: -36463.0 ( -79.10 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_4W4K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W4K-query.scw
PDB file :
Tito_Scwrl_4W4K.pdb
: