Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSTRRDLPQSPYLAAVTGRKPSRVPVWFMRQAGRSLPEYRALRERY-SMLAACFEPDVACEITLQPIRRYDVDAAILFSDIVVPLRAAGVDLDIVADVGPVIADPVRTAADVAAMKPLDPQ-AIQPVLVAASLLVAEL-GDVPLIGFAGAPFTLASYLVEGGPSRHHAHVKAMMLAEPASWHALMAKLTDLTIAFLVGQIDAGVDAIQVFDSWAGALSPIDYRQYVLPHSARVFAALGEHG----VPMTHFGVGTAELLGAMSEAVTAGERPGRGAVVGVDWRTPLTDAAARVVPGTALQGNLDPAVVLAGWPAVERAARAVVDDGRRAVDAGAAGHIFNLGHGVLPESDPAVLADLVSLVHSL |
| 3CYV Chain:A ((3-348)) | -----ELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGC--------DALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATIL-----AGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHRL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CYV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -272418 for 3067 contacts (-88.8/contact) +
2D Compatibility (PS) -36124 + (NN) -14710 + (LL) 100
1D Compatibility (HY) -26400 + (ID) 7000
Total energy: -356552.0 ( -116.25 by residue)
QMean score : 0.531
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