Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRDLAPALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVGKPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAVGQPLQDHLAAVLHRQR
2Q4N Chain:A ((18-165))
------PFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSGKPVIAYTQKTWKLESGAPMHAESGYFRPRPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKL----KSD----LVGNASKVKEISREFELVDGKLSYVVRMSTTTNPLQPHLKAILDK--
General information:
TITO was launched using:
RESULT:
Template:
2Q4N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12226 for 1007 contacts (-12.1/contact) +
2D Compatibility (PS) -14981 + (NN) -3203 + (LL) 884
1D Compatibility (HY) 800 + (ID) 1600
Total energy: -30326.0 ( -30.12 by residue)
QMean score : 0.188
(partial model without unconserved sides chains):
PDB file :
Tito_2Q4N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Q4N-query.scw
PDB file :
Tito_Scwrl_2Q4N.pdb
: