Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVGTLVASVLPATVFEDLAYAELYSDPPGLTPLPEEAPLIARSVAKRRNEFITVRHCARIALDQLGVPPAPILKGDKGEPCWPDGMVGSLTHCAGYRGAVVGRRDAVRSVGIDAEPHDVLPNGVLDAISLPAERADMPRTMPAALHWDRILFCAKEATYKAWFPLTKRWLGFEDAHITFETDSTGWTGRFVSRILIDGSTLSGPPLTTLRGRWSVERGLVLTAIVL
4QJL Chain:A ((3-227))
--ISMLVSSVLPGTVVDDLAYAELYSDPPGLVPLPEEEPLIAKSVAKRRNEFITVRHCARVALGDLGVPPVPILKGDKGQPCWPDGVVGSLTHCSGYRGAVVGRSAAVRSVGIDAEPHDVLSNGVLDAISLPEERDEIPSAMPDGLHWDRILFCAKEATYKVWFPLTNRWLGFEDAHITFEADDSGRTGRFVSRILIDPSALWGPPLTTLHGRWSVERGLVLTAIVL
General information:
TITO was launched using:
RESULT:
Template:
4QJL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151150 for 1868 contacts (-80.9/contact) +
2D Compatibility (PS) -23958 + (NN) -13291 + (LL) 260
1D Compatibility (HY) -30400 + (ID) 9350
Total energy: -227889.0 ( -122.00 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_4QJL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QJL-query.scw
PDB file :
Tito_Scwrl_4QJL.pdb
: