Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLRLVSPIKAFADGIVAVAIAVVLMFGLANTPRAVAADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQV--AAANPAVTFVGI-ATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALTS
4NMU Chain:A ((4-146))
-----------------------------ADKEKMQIGKEAPNFVVTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIALDADETDI-AVKNFVNQYGLKFPVAIDKGQKIIGTYGVGPLPTSFLIDKDG--KVVEQIIGEQTKEQLEGYLKKIT-
General information:
TITO was launched using:
RESULT:
Template:
4NMU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86253 for 1053 contacts (-81.9/contact) +
2D Compatibility (PS) -15033 + (NN) -7115 + (LL) 3048
1D Compatibility (HY) -10800 + (ID) 1850
Total energy: -118003.0 ( -112.06 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_4NMU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NMU-query.scw
PDB file :
Tito_Scwrl_4NMU.pdb
: