Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIEEQRTMSVEGADQQSEKLFHYLKKVAVELDETRARLREYEQRATEPVAVVGIGCRFPGGVDGPDGLWDVVSAGRDVVSEFPTDRGWDVEGLYDPDPDAEGKTYTRWGAFLDDATGFDAGFFGIAPSEVLAMDPQQRLMLEVSWEALEHAGIDPLSLR-------GSATGVYTGIFAASY---GNRDTGGLQGYGLTGTSISVASGRVSYVLGLQGPAVSVDTACSSSLVAIHWAMSSLRSGECDLALAGGVTVMGLPSIFVGFSRQRGLAADGRCKAFAAAADGTGWGEGAGVVVLERLSDARRLGHSVLAVVRGSAVNQDGASNGLTAPNGLAQQRVIQVALANAGLSAADVDVVEAHGTATTLGDPIEAQALLSTYGQGGPAEQPLWVGSIKSNMGHTQAAAGVAGVIKMVQAMRHGVMPATLHVDEPSPRVDWTSGAVSVLTEAREWS-------VDGR-PRRAAVSSFGISGTNAHLILEEAPVPAPAEAPVEASESTGGRGRRWCRG |
5ERB Chain:A ((7-458)) | ----------------------------------------------EDIAIIGISGRYPQA-ENLQEFWKNLSEGTDCITEIPNDR-WDHSLYYDADKDKEGKTYGKWGGFLKDVDKFDPQFFSISPRDAKLMDPQERLFLQCVYETMEDAGYTRKKLTEKSGDLLGANVGVYVGVMYEEYQLYGAEEQAR------TGNPSSIAN-RASYVFGFNGPSMALDTMCSSSLTAIHLACQSLRNGECEAAFAGGVNVSVHPNKYLMLGQNRFLSSKGRCESFGEGGDGYVPGEGVGAVLLKPLSKAKADGDHIYGLIKGTAVNHDGKTNGYSVPNPNAQAAVIKQALKDAGTDPRAVSYIEAHGTGTSLGDPIEITGLTKAFSEQTQ--QFCAIGSAKSNIGHCESAAGIAGLTKVLLQMKHKQLAPSLHSRTLNPNIDFLATPFKVQQTLEEWKRPVINEN----LPRTAGLSSFGAGGVNAHIVIEE--------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 5ERB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -237939 for 3740 contacts (-63.6/contact) +
2D Compatibility (PS) -42798 + (NN) -14861 + (LL) 5752
1D Compatibility (HY) -28800 + (ID) 8800
Total energy: -327446.0 ( -87.55 by residue)
QMean score : 0.460
|
|
|