Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADKSKRPPRFDLKSADGSFGRLVQIGGTTIVVVFAVVLVFYIVTSRDDKKDGVAGPGDAVRVTSSKLVTQPGTSNPKAVVSFYEDFLCPACGIFERGFGPTVSKLVDIGAVAADYTMVAILDSASNQHYSSRAAAAAYCVADESIEAFRRFHAALFSKDIQPAELGKDFPDNARLIELAREAGVVGKVPDCINSGKYIEKVDGLAAAVNVHATPTVRVNGTEYEWSTPAALVAKIKEIVGDVPGIDSAAATATS
4JR6 Chain:A ((27-224))
---------------------------------------------------------GDAVRVTSSKLVTQPGTSNPKAVVSFYEDFLCPACGIFERGFGPTVSKLVDIGAVAADYTMVAILDSASNQHYSSRAAAAAYCVADESIEAFRRFHAAMFSKDIQPAELGKDFPDNARLIELAREAGVVGKVPDCINSGKYIEKVDGLAAAVNVHATPTVRVNGTEYEWSTPAAMVAKIKEIVGDVPGIDSAAATATS
General information:
TITO was launched using:
RESULT:
Template:
4JR6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137096 for 1640 contacts (-83.6/contact) +
2D Compatibility (PS) -21127 + (NN) -4662 + (LL) 3248
1D Compatibility (HY) -24800 + (ID) 9800
Total energy: -194237.0 ( -118.44 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_4JR6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JR6-query.scw
PDB file :
Tito_Scwrl_4JR6.pdb
: