Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQIMYNYPAMMAHAGDMAGYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALEDLVRAYQSMSGTHESNTMAMLARDGAEAAKWGG
4LWS Chain:A ((49-121))
----------------DIEQSANAIRGMQNQLASAKDQLRSHWEGDASMAFEAVFNRFN---EDFSRVLKALDGMHESLVQTRITYEAREEA----
General information:
TITO was launched using:
RESULT:
Template:
4LWS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5367 for 344 contacts (-15.6/contact) +
2D Compatibility (PS) -7825 + (NN) -1151 + (LL) 1712
1D Compatibility (HY) -3600 + (ID) 950
Total energy: -17181.0 ( -49.94 by residue)
QMean score : 0.177
(partial model without unconserved sides chains):
PDB file :
Tito_4LWS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LWS-query.scw
PDB file :
Tito_Scwrl_4LWS.pdb
: