Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAIDPNSIGAVTEPMLFEWTDRDTLLYAIGVGAGTGDLAFTTENSHGIDQQVLPTYAVICCPAFGAAAKV---------------GTFNPAALLHGSQGIRLHAPL-PAAGKLSVVTEVADIQDKGEGKNAIVVLRGRGCDPESGSLVAETLTTLVLRGQGGFGGARGERPAAPEFPDRHPDARIDMPTREDQALIYRLSGDRNPLHSDPWFATQLAGFPKPILHGLCTYGVAGRALVAELGGGVAANITSIAARFTKPVFPGETLSTVIWRTEPGRAVFRTEVAGSDGAEARVVLDDGAVEYVAG |
3KH8 Chain:A ((20-290)) | ------------------YNQRDLLMYAVGIGES--DLQFTYEFDEKFS--AFPLYPV-CLPFKGQSQDVVPFPPETISAAPDGMPSFNPAMILHGEQSVEILRPLDPSGGTLTGKTKVISFYDKGKG----TLMETQTQFEDGNGPVAKLISGSFIRGLTGYEGKGRKLPARVQIPKRQPDFNDEFKTSPHQAQVYRLSGDYNSLHIDPEIAKSV-GFKQPILHGLCSMGVASRALFKQFCGGDVARFKSIRVRFSSPCFPGETIQTRMWQEGSGKVLFQA-VVKERGA---VIVDGGEFVY--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KH8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -113215 for 2030 contacts (-55.8/contact) +
2D Compatibility (PS) -27145 + (NN) -13825 + (LL) 2652
1D Compatibility (HY) -20800 + (ID) 5200
Total energy: -177533.0 ( -87.45 by residue)
QMean score : 0.401
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