Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLSVAPKEIAGHGLLDGKVVVVTAAAGTGIGSATARRALAEGADVVISDHHERRLGETAAELSALGLGRVEHVVCDVTSTAQVDALIDSTTARMGRLDVLVNNAGLGGQTPVADMTDDEWDRVLDVSLTSVFRATRAALRYFRDAPHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAAEYGVRINAVSPSIARHKFLDKTASAELLDRLAAGEAFGRAAEPWEVAATIAFLASDYSSYLTGEVISVSCQHP |
| 4NBV Chain:A ((3-241)) | ---------------LQGRVAIITGAA-AGIGFATAQRFAEDGAIVVLCDVQEARVREAAARLAATGA-TVSAYRVDVTRRDEVDAMVAAVLAAHQRVDILVNNAGITKDARLAKMTEAQFDAVIDVNLKGVFNCAQAVAGLMTEQGK-GVILNASSVVGLYGNFGQTNYAASKFGVIGFTKTWARELGPKGVRVNAVCPGFVNTEIL-QTVPDKVLDGMTSSCWLRRLAEPAEIASIYAFLASDDASYVNGVAIEAS---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NBV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117941 for 2075 contacts (-56.8/contact) +
2D Compatibility (PS) -26222 + (NN) -8301 + (LL) 352
1D Compatibility (HY) -18400 + (ID) 4900
Total energy: -175412.0 ( -84.54 by residue)
QMean score : 0.563
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