Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MICFDDVSKVYAHGATAVDRLTLEVPNGMLTVFVGPSGCGKTTALRMINRMVDPTSGTITVDGTDVSTVNAVK-LRLGIGYVIQNAGLMPHQRVIDNVATVPV-LKGQPRRAARKAGYEVLERVGLDPKVATRYPAQLSGGEQQRVGVARALAADPPILLMDEPFSAVDPVVRHELQNEILRLQAELHK---TIVFVTHDIDEALKLADLVAVFAPGGALAQYDETARLLSSPANDFVSKFIGLGRGYRWLQLFDAAGLPVRDIEQVSVNGLSDARDRQVRDGWVLVVDGAGAPLGWIDADGRRRHRGGAALSDAMTVGGSVFRPNGNLSQALDAALSSPSGVGVAVDGGGKVIGGILAADVLAEFQKGKKAGGGAKPCTT |
4U00 Chain:A ((23-238)) | --------------------IHLEVAPGEKLVIIGPSGSGKSTLIRTINRLEDFQEGEVVVDGLSVKDDRALREIRREVGMVFQQFNLFPHMTVLENVTLAPMRVRRWPREKAEKKALELLERVGILDQ-ARKYPAQLSGGQQQRVAIARALAMEPKIMLFDEPTSALDP----EMVGEVLDVMRDLAQGGMTMVVVTHEMGFAREVADRV-VFMDGGQIVEEGRPEEIFTRPKEERTRSFL------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U00.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122886 for 1697 contacts (-72.4/contact) +
2D Compatibility (PS) -23707 + (NN) -16931 + (LL) 7880
1D Compatibility (HY) -18000 + (ID) 4550
Total energy: -178194.0 ( -105.01 by residue)
QMean score : 0.544
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