Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGLFGKRKSRATRRAEARAIKARAKLEAKLSAKNEARRIKAAQRAESKALKAQLKARRDSDRAALKVAEAE----LKVAREGKLLSPTRIRRLLTVSRLLAPILTPVIYRAAMAARGLIDQRRADQLGVPLAQIGRFSGHGARLSARVGGAERSLRMVQEKKPKDVETKQFVSAVTNRLTDLSAAVAAAEHMPAKRRRTAHSAISSQLDGIEADLMARLGLT |
1F5N Chain:A ((485-561)) | -----KEKEIEVERVKAESAQASAKMLHEMQRKNE-QMMEQKERSYQEHLK-QLTEKMENDRVQL-LKEQERTLALKLQEQEQLL----------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F5N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 24591 for 272 contacts (90.4/contact) +
2D Compatibility (PS) -8870 + (NN) -10820 + (LL) 11412
1D Compatibility (HY) -4000 + (ID) 1200
Total energy: 11113.0 ( 40.86 by residue)
QMean score : 0.846
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