Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRCFWCNDDPLYMAYHDEEWGVPQRDPDALFELLLLEGFQAGLSWITVLKKRERYREVLFGFDVQRVAQMSDAEIDELMLDPGIIRNRAKLNAARQNAQAWLELDDPAG----FLWSFVGGQPKINHFAGRAEVPAITPEAEAMSKALRKAGFNFVGPTICYAFMQASGMVMDHTQDCDRYAQLVG
2JG6 Chain:A ((1-179))
MNECAFGTKDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDCPSKPKHN-
General information:
TITO was launched using:
RESULT:
Template:
2JG6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85291 for 1317 contacts (-64.8/contact) +
2D Compatibility (PS) -19090 + (NN) -14037 + (LL) -76
1D Compatibility (HY) -16000 + (ID) 3650
Total energy: -138144.0 ( -104.89 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_2JG6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JG6-query.scw
PDB file :
Tito_Scwrl_2JG6.pdb
: