Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNQRQYPRTPLKCRIRISHPLFGELMAQTRDLSDTGVYVKHPDLT-QLPTGSVVTGQVQDLP--I--DAPILQMEVVRVDAE----GVGLRFLSEA
2RDE Chain:A ((132-224))
-SQLRKEPRFELNLAGKVLFDEH-RGDCELRDLSRSGCRFITPPLGKTYQVGDLVALEIF-SDLRGTKTFPPLTGKICNLQRSLHHARYGLEFNEEG
General information:
TITO was launched using:
RESULT:
Template:
2RDE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29326 for 534 contacts (-54.9/contact) +
2D Compatibility (PS) -8972 + (NN) -1078 + (LL) -40
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -42766.0 ( -80.09 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_2RDE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RDE-query.scw
PDB file :
Tito_Scwrl_2RDE.pdb
: