Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLIVDDHPAIRLAVR-LLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVLTRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI
4GVP Chain:A ((3-207))
--KVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMK-KRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI
General information:
TITO was launched using:
RESULT:
Template:
4GVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124483 for 1647 contacts (-75.6/contact) +
2D Compatibility (PS) -22814 + (NN) -14435 + (LL) 104
1D Compatibility (HY) -11200 + (ID) 3100
Total energy: -175928.0 ( -106.82 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_4GVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GVP-query.scw
PDB file :
Tito_Scwrl_4GVP.pdb
: