Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRLQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGL-PAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGIDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRSAEHAAAVARL-ADGVVVGSALIDRIA-KARDNAQAV-KDVLALCGELAEGVRNAR
2DZW Chain:A ((6-247))
-----------------SLIPYLTAGDPDKQSTLNFLLALDEYAGA--IELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRR-HSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGT----EEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEALLGI---------
General information:
TITO was launched using:
RESULT:
Template:
2DZW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180245 for 2030 contacts (-88.8/contact) +
2D Compatibility (PS) -26907 + (NN) -19972 + (LL) 2352
1D Compatibility (HY) -20400 + (ID) 5150
Total energy: -250322.0 ( -123.31 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_2DZW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DZW-query.scw
PDB file :
Tito_Scwrl_2DZW.pdb
: