Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSRDLPSLNALRAFEAAARLHSISLAAEELHVTHGAVSRQVRLLEDDLGVALFGKDGRGVKLTDSGVRLRDACGDAFERLRGVCAELRRQT--AEAPFVLGVPGSLLARWFIPRLDQLNRALPDLRLQLSTSEGEFDPRRPGLDAMLWFAEPPWPADMQVFELAPERMGPVVSPRLAQETGLAQAPAARLLQEPL------LHTASRPQAWP--AWAASQGLAAEALRYGQG-FE--HLYYLLEAAVAGLGVAIAPEPLVRDDLAAGRLAAPWGFIETDAR-LALWVPARLHDPRAGRLAQWLREQLAG |
| 3T1B Chain:B ((3-280)) | -------LDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAPSELTKRMMMPMFNAFMEKYPDIHIELMMSNQAD------LDPTEWDV---------IFRVGPQRDSSLIARKIGEVKDILVASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQASALNVVRSACSEGLGITLMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVIGYHL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3T1B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -116520 for 1813 contacts (-64.3/contact) +
2D Compatibility (PS) -27749 + (NN) -3659 + (LL) 120
1D Compatibility (HY) -16400 + (ID) 2950
Total energy: -167158.0 ( -92.20 by residue)
QMean score : 0.321
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