Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIHSSGGVDMKKTASAVWQGGLKDGKGTLSTESGALKDNPYGFNTRFEGAPGTNPEELIGAAHAGCF--SMALSMMLGEAGLTAERIETRAEVTLDKQSDGFAITAVHLVLRARVPGADAQTFEQIANKAKAGCPVSKVLNAKISLDASLDG
4MH4 Chain:A ((52-143))
----------------------------------------------------GTNPEQLFAAGWSACFIGAMQLAARAAKVTLPAD-LAVDAEVDLGTAGNAYFLQA---RLNVSVPGLERDVAQRIVDAAHQTCPYSKATRGNIDVDIRIA-
General information:
TITO was launched using:
RESULT:
Template:
4MH4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42657 for 572 contacts (-74.6/contact) +
2D Compatibility (PS) -9909 + (NN) -5094 + (LL) 1892
1D Compatibility (HY) -4800 + (ID) 1500
Total energy: -62068.0 ( -108.51 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_4MH4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MH4-query.scw
PDB file :
Tito_Scwrl_4MH4.pdb
: