Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVEIHLPGATTALPARLDGVVIGVLLDVPDAAAPVVAYPGCPSEHGLAAATTTQLSR-ADIGAQVALMFVAGD----------------PRQPLLIGRIQRLPQEALAQLDGERLEFSAEREIVLRCGKASITLTRAGKVIIRGAYLSSRSTGVNRIKGGSVQIN
1GKU Chain:B ((803-900))
--------------------------------------------ENGLITYHRTDSTRVSDVGQRIAKEYLGDDFVGREWGESGAHECIRPTRPLTRDDVQRLIQEGVLVVEGLRWEHFALYDLIFRRFMAS--QCRPFKVVVKKYSIEFDGKTAEEERIVRAEGR
General information:
TITO was launched using:
RESULT:
Template:
1GKU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18906 for 436 contacts (-43.4/contact) +
2D Compatibility (PS) -8378 + (NN) -598 + (LL) 2792
1D Compatibility (HY) -3600 + (ID) 1350
Total energy: -30040.0 ( -68.90 by residue)
QMean score : 0.156
(partial model without unconserved sides chains):
PDB file :
Tito_1GKU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GKU-query.scw
PDB file :
Tito_Scwrl_1GKU.pdb
: