Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTTVIPPSLLDVDFPAGSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLDLDWAGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVALFAERAMAHPSYLGAGSPVSREAVACA
1PJS Chain:A ((216-447))
-----------------GEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFV--------VPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVT------G--ELDWENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQ--QVESPALIIVGRVVALRDKLNWFSNH----------------
General information:
TITO was launched using:
RESULT:
Template:
1PJS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -191784 for 1848 contacts (-103.8/contact) +
2D Compatibility (PS) -24412 + (NN) -13540 + (LL) 2156
1D Compatibility (HY) -28400 + (ID) 6450
Total energy: -262430.0 ( -142.01 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_1PJS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PJS-query.scw
PDB file :
Tito_Scwrl_1PJS.pdb
: