Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLPAMRTGLLCALLGVTAPAWAEYVTVISFGGANKEAQETAFYKPFKSATGNRVVHGSYNGDLAKLKRMVEISHVSWD---VVEVEAPELARGCEEGLFEKLDMAKVGDPADFVPGAV-----QPCGVGIFVWTTLLAYNPGKVAG--SPQGWADFWDVKKFPGKRGLRWGAKYSLEFALMADGVAPKDVYQTLATPAGVERAFRKLDELKPY-IHWWKSGQDPVRDLADGTVVMSSAYNGRIAAAQAEKQRLAMVWSGGVYDFDFWALPVGVWKKQLAEEFIRFASQPEQQKAFAENIAYG-PANRKAVGLLDPQVAANLPTAPQNMQNAVGMNVAFWAEHGEALEQRFQNWAKR |
| 3RPW Chain:A ((31-340)) | --------------------QSNVVIMQDPGGGYGDALRKVMYDPFEKETGIKVVTVQEARSGPRIKAQAEAGKAQWDLTFIFDQETKLLGDCC----LADIDYSKLSESAHKTLAAMPDNLKRKKGVALQVIGVGLVYNKDKFKGDKAPQTWADFWDVKKFPGRRCMPAWPRFTFEAALMADGVTKDKLY-----PIDMDRALKKLKEIKPHVVKWWTTAAQPPQLILDGEADMCLAYTGSMSKLALEGAPIDLTFNQGFVYYDFFSIPKGAPNYDNALKLLSWRLDPKRAAQLTSTFPVALPSKVVFDAATDKNIARYWANNPENVAKAIEWSPDFWGAPSPAGNSTNEEYGQE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RPW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -102701 for 2488 contacts (-41.3/contact) +
2D Compatibility (PS) -32440 + (NN) -10496 + (LL) 2456
1D Compatibility (HY) -16800 + (ID) 4350
Total energy: -164331.0 ( -66.05 by residue)
QMean score : 0.461
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