Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTLAPESTRQNLR-SQRLNLLTNEPHQRLESLVKSKEPFASRDNFARFVAAQYLFQHDLEPLYRNEALARLFPGLASRARDDAARADLADLGHPVPEGDQSV-READLSLAEALGWLFVSEGSKLGAAFLFKKAAALELDENFGARHLAEPEGGRAQGWKSFVAILDGIELNEEEERLAAKGASDAFNRFGDLLERTFA
1P3U Chain:A ((8-192))
-----------ALTFAKRLKADTTAVHDSVDNLVMSVQPFVSKENYIKFLKLQSVFHKAVDHIYKDAELNKAIPELEYMARYDAVTQDLKDLGEEPYKFDKELPYEAG---NKAIGWLYCAEGSNLGAAFLFKHAQKLDYNGEHGARHLAPHPDGRGKHWRAFVEHLNALNLTPEAEAEAIQGAREAFAFYKVVLRETFG
General information:
TITO was launched using:
RESULT:
Template:
1P3U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34873 for 1408 contacts (-24.8/contact) +
2D Compatibility (PS) -20259 + (NN) -15949 + (LL) 1036
1D Compatibility (HY) -14000 + (ID) 3550
Total energy: -87595.0 ( -62.21 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_1P3U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P3U-query.scw
PDB file :
Tito_Scwrl_1P3U.pdb
: