Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELILLHNPRCSKSRAALELLEARGLQPQVVRYLETPPSAAELKAILAKLGIPARQLLRTGEDEYKALGLDEPSLGEEAIIEAMARHPKLIERPVLVAGDKAVVGRPPERVLEILA
1SD8 Chain:A ((3-116))
--NITIYHNPACGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIADMGISVRALLKKNVEPYEQLGLAEDKFTDDQLIDFMLQHPILINRPIVVTPLGTRLCRPSEVVLDILQ
General information:
TITO was launched using:
RESULT:
Template:
1SD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82158 for 854 contacts (-96.2/contact) +
2D Compatibility (PS) -12467 + (NN) -6898 + (LL) 180
1D Compatibility (HY) -12800 + (ID) 2250
Total energy: -116393.0 ( -136.29 by residue)
QMean score : 0.803
(partial model without unconserved sides chains):
PDB file :
Tito_1SD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SD8-query.scw
PDB file :
Tito_Scwrl_1SD8.pdb
: