Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKALKTLFIATALLGSAAGVQAADNFVGLTWG-ETSNNIQKSKSLNRNLNSPNLDKVIDNTGTWGIRAGQQFEQGRYYATYENISDTSSGNKLRQQNLLGSYDAFLPIGDNNTKLFGGATLGLVKLEQDGKGFKRDSDVGYAAGLQAGILQELSKNASIEGGYRYLRTNASTEMTPHGGNKLGSLDLHSSSQFYLGANYKF |
1RYL Chain:A ((67-106)) | --------LSRAVLGEHSLED--DGFLGLTWNQELAATIDRLESLDRNELRKQFSIKRLNEMEIYPGVTFSEELEGQLFASIMLDMEKLISAYRRMLRQGNHALTVIV--------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RYL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1364 for 170 contacts (-8.0/contact) +
2D Compatibility (PS) -3803 + (NN) 904 + (LL) 4372
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -3841.0 ( -22.59 by residue)
QMean score : 0.344
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